Index

A

anchor (xyzrender.types.VectorArrow attribute) annotations (xyzrender.types.RenderConfig attribute) apply_hydrogen_flags() (in module xyzrender.config) atom_cmap (xyzrender.types.RenderConfig attribute) atom_gradient_strength (xyzrender.types.RenderConfig attribute) atom_interlocking (xyzrender.types.RenderConfig attribute) atom_opacity (xyzrender.types.RenderConfig attribute) atom_scale (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute) atom_stroke_color (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute)

atom_stroke_width (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute) atom_wash (xyzrender.types.RenderConfig attribute) atoms_above_bonds (xyzrender.types.RenderConfig attribute) auto_align (xyzrender.types.RenderConfig attribute) auto_hide_h (xyzrender.types.RenderConfig attribute) auto_orient (xyzrender.types.RenderConfig attribute) axis_colors (xyzrender.types.RenderConfig attribute) axis_width_scale (xyzrender.types.RenderConfig attribute)

B

background (xyzrender.types.RenderConfig attribute) blur_sigma (xyzrender.types.MOParams attribute) bond (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute) bond_color (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute) bond_color_by_element (xyzrender.types.RenderConfig attribute) bond_gap (xyzrender.types.RenderConfig attribute) bond_gradient (xyzrender.types.RenderConfig attribute) bond_gradient_strength (xyzrender.types.RenderConfig attribute) bond_orders (xyzrender.types.RenderConfig attribute)

bond_outline_color (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute) bond_outline_width (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute) bond_width (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute) BondStyle (class in xyzrender.types) build_config() (in module xyzrender.config) build_region_config() (in module xyzrender.config) build_render_config() (in module xyzrender.config) build_surface_params() (in module xyzrender.config)

C

canvas_size (xyzrender.types.RenderConfig attribute) cbar (xyzrender.types.RenderConfig attribute) cell_color (xyzrender.types.RenderConfig attribute) cell_data (xyzrender.api.Molecule attribute) (xyzrender.types.RenderConfig attribute) cell_line_width (xyzrender.types.RenderConfig attribute) cell_origin (xyzrender.types.CellData attribute) CellData (class in xyzrender.types) cmap_palette (xyzrender.types.RenderConfig attribute) cmap_range (xyzrender.types.RenderConfig attribute) cmap_symm (xyzrender.types.RenderConfig attribute) cmap_unlabeled (xyzrender.types.RenderConfig attribute)

color (xyzrender.types.DensParams attribute) (xyzrender.types.HighlightGroup attribute) (xyzrender.types.NCIParams attribute) (xyzrender.types.OverlayConfig attribute) (xyzrender.types.VectorArrow attribute) color_mode (xyzrender.types.NCIParams attribute) color_overrides (xyzrender.types.RenderConfig attribute) colors (xyzrender.api.EnsembleFrames attribute), [1] config (xyzrender.types.OverlayConfig attribute) (xyzrender.types.StyleRegion attribute) conformer_graphs (xyzrender.api.EnsembleFrames attribute), [1] copy() (xyzrender.api.Molecule method) cube_data (xyzrender.api.Molecule attribute)

D

DASHED (xyzrender.types.BondStyle attribute) dens_color (xyzrender.config.SurfaceOverrides attribute) (xyzrender.types.RenderConfig attribute) dens_contours (xyzrender.types.RenderConfig attribute) dens_cutoff (xyzrender.types.NCIParams attribute) dens_isovalue (xyzrender.types.RenderConfig attribute)

DensParams (class in xyzrender.types) dof (xyzrender.types.RenderConfig attribute) dof_strength (xyzrender.types.RenderConfig attribute) DOTTED (xyzrender.types.BondStyle attribute) dpi (xyzrender.types.RenderConfig attribute) draw_on_top (xyzrender.types.VectorArrow attribute)

E

ensemble (xyzrender.api.Molecule attribute) ensemble_colors (xyzrender.types.RenderConfig attribute)

EnsembleFrames (class in xyzrender.api) esp_surface (xyzrender.types.RenderConfig attribute) ESPParams (class in xyzrender.types)

F

fixed_center (xyzrender.types.RenderConfig attribute) fixed_span (xyzrender.types.RenderConfig attribute) flat (xyzrender.types.MOParams attribute) flat_mo (xyzrender.config.SurfaceOverrides attribute) (xyzrender.types.RenderConfig attribute)

fog (xyzrender.types.RenderConfig attribute) fog_strength (xyzrender.types.RenderConfig attribute) font_size (xyzrender.types.VectorArrow attribute)

G

GIFResult (class in xyzrender.types) glow_indices (xyzrender.types.RenderConfig attribute)

glow_strength (xyzrender.types.RenderConfig attribute) gradient (xyzrender.types.RenderConfig attribute) graph (xyzrender.api.Molecule attribute)

H

h_scale (xyzrender.types.RenderConfig attribute) haptic (xyzrender.types.RenderConfig attribute) hide_bonds (xyzrender.types.RenderConfig attribute) hide_h (xyzrender.types.RenderConfig attribute) highlight_colors (xyzrender.types.RenderConfig attribute) highlight_groups (xyzrender.types.RenderConfig attribute) HighlightGroup (class in xyzrender.types)

host_atom (xyzrender.types.VectorArrow attribute) hue_shift_factor (xyzrender.types.RenderConfig attribute) hull_atom_indices (xyzrender.types.RenderConfig attribute) hull_colors (xyzrender.types.RenderConfig attribute) hull_edge_width_ratio (xyzrender.types.RenderConfig attribute) hull_opacity (xyzrender.types.RenderConfig attribute) hull_ordered (xyzrender.types.RenderConfig attribute)

I

idx_format (xyzrender.types.RenderConfig attribute) indices (xyzrender.types.HighlightGroup attribute) (xyzrender.types.StyleRegion attribute) is_axis (xyzrender.types.VectorArrow attribute)

iso (xyzrender.config.SurfaceOverrides attribute) isovalue (xyzrender.types.DensParams attribute) (xyzrender.types.ESPParams attribute) (xyzrender.types.MOParams attribute) (xyzrender.types.NCIParams attribute)

L

label (xyzrender.types.VectorArrow attribute) label_color (xyzrender.types.RenderConfig attribute) label_font_size (xyzrender.types.RenderConfig attribute) label_offset (xyzrender.types.RenderConfig attribute)

lattice (xyzrender.api.Molecule property) (xyzrender.types.CellData attribute) light_shift_factor (xyzrender.types.RenderConfig attribute) load() (in module xyzrender.api) load_config() (in module xyzrender.config)

M

measure() (in module xyzrender.api) mo_blur (xyzrender.config.SurfaceOverrides attribute) mo_blur_sigma (xyzrender.types.RenderConfig attribute) mo_contours (xyzrender.types.RenderConfig attribute) mo_isovalue (xyzrender.types.RenderConfig attribute) mo_neg_color (xyzrender.config.SurfaceOverrides attribute) (xyzrender.types.RenderConfig attribute) mo_outline_color (xyzrender.types.RenderConfig attribute) mo_outline_width (xyzrender.types.RenderConfig attribute) mo_pos_color (xyzrender.config.SurfaceOverrides attribute) (xyzrender.types.RenderConfig attribute)

mo_upsample (xyzrender.config.SurfaceOverrides attribute) mo_upsample_factor (xyzrender.types.RenderConfig attribute) module xyzrender.api xyzrender.config xyzrender.types mol_color (xyzrender.types.RenderConfig attribute) Molecule (class in xyzrender.api) MOParams (class in xyzrender.types)

N

nci_bonds (xyzrender.types.RenderConfig attribute) nci_color (xyzrender.types.RenderConfig attribute) nci_contours (xyzrender.types.RenderConfig attribute) nci_cutoff (xyzrender.config.SurfaceOverrides attribute) nci_dash (xyzrender.types.RenderConfig attribute) nci_element (xyzrender.types.RenderConfig attribute)

nci_isovalue (xyzrender.types.RenderConfig attribute) nci_mode (xyzrender.config.SurfaceOverrides attribute) (xyzrender.types.RenderConfig attribute) nci_width (xyzrender.types.RenderConfig attribute) NCIParams (class in xyzrender.types) neg_color (xyzrender.types.MOParams attribute)

O

opacities (xyzrender.api.EnsembleFrames attribute), [1] opacity (xyzrender.types.OverlayConfig attribute) orient() (in module xyzrender.api) (xyzrender.api.Molecule method)

oriented (xyzrender.api.Molecule attribute) origin (xyzrender.types.VectorArrow attribute) overlay (xyzrender.types.RenderConfig attribute) OverlayConfig (class in xyzrender.types)

P

padding (xyzrender.types.RenderConfig attribute) path (xyzrender.types.GIFResult property) periodic_image_opacity (xyzrender.types.RenderConfig attribute) pore_centroids (xyzrender.types.RenderConfig attribute) pore_node_ids (xyzrender.types.RenderConfig attribute)

pore_radii (xyzrender.types.RenderConfig attribute) pore_sphere_color (xyzrender.types.RenderConfig attribute) pore_sphere_opacity (xyzrender.types.RenderConfig attribute) pore_spheres (xyzrender.types.RenderConfig attribute) pos_color (xyzrender.types.MOParams attribute) positions (xyzrender.api.EnsembleFrames attribute), [1]

R

radius_scale (xyzrender.types.RenderConfig attribute) reference_idx (xyzrender.api.EnsembleFrames attribute), [1] region_specs (xyzrender.types.RenderConfig attribute)

render() (in module xyzrender.api) render_gif() (in module xyzrender.api) RenderConfig (class in xyzrender.types)

S

saturation_shift_factor (xyzrender.types.RenderConfig attribute) save() (xyzrender.types.GIFResult method) (xyzrender.types.SVGResult method) scale (xyzrender.types.VectorArrow attribute) show (xyzrender.types.OverlayConfig attribute) show_cell (xyzrender.types.RenderConfig attribute) show_convex_hull (xyzrender.types.RenderConfig attribute) show_h_indices (xyzrender.types.RenderConfig attribute) show_hull_edges (xyzrender.types.RenderConfig attribute)

show_indices (xyzrender.types.RenderConfig attribute) skeletal_label_color (xyzrender.types.RenderConfig attribute) skeletal_style (xyzrender.types.RenderConfig attribute) SOLID (xyzrender.types.BondStyle attribute) style_regions (xyzrender.types.RenderConfig attribute) StyleRegion (class in xyzrender.types) surface_opacity (xyzrender.types.RenderConfig attribute) surface_style (xyzrender.types.RenderConfig attribute) SurfaceOverrides (class in xyzrender.config) SVGResult (class in xyzrender.types)

T

to_xyz() (xyzrender.api.Molecule method) transparent (xyzrender.types.RenderConfig attribute) ts_bonds (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute)

ts_color (xyzrender.types.RenderConfig attribute) ts_dash (xyzrender.types.RenderConfig attribute) ts_element (xyzrender.types.RenderConfig attribute) ts_width (xyzrender.types.RenderConfig attribute)

U

unbond (xyzrender.types.OverlayConfig attribute) (xyzrender.types.RenderConfig attribute)

upsample_factor (xyzrender.types.MOParams attribute)

V

vdw_gradient_strength (xyzrender.types.RenderConfig attribute) vdw_h_scale (xyzrender.types.RenderConfig attribute) vdw_indices (xyzrender.types.RenderConfig attribute) vdw_interlock_samples (xyzrender.types.RenderConfig attribute) vdw_interlocking (xyzrender.types.RenderConfig attribute) vdw_opacity (xyzrender.types.RenderConfig attribute) vdw_outline_color (xyzrender.types.RenderConfig attribute)

vdw_outline_width (xyzrender.types.RenderConfig attribute) vdw_scale (xyzrender.types.RenderConfig attribute) vector (xyzrender.types.VectorArrow attribute) vector_color (xyzrender.types.RenderConfig attribute) vector_scale (xyzrender.types.RenderConfig attribute) VectorArrow (class in xyzrender.types) vectors (xyzrender.types.RenderConfig attribute)

W

width (xyzrender.types.VectorArrow attribute)

X

xyzrender.api module xyzrender.config module

xyzrender.types module